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The Unresolved Thyroid: Why Your Protocols Can Stall Without Adrenal Support

by Dr. Dan Kalish

The Pitfall: Treating TSH Without Fixing the HPA Axis

For functional medicine practitioners, stalled thyroid protocols—where TSH normalizes but symptoms like fatigue, weight gain, and brain fog persist—are a common and frustrating clinical challenge. The pitfall often lies in treating the thyroid gland in isolation while neglecting the powerful, upstream influence of chronic stress and HPA axis dysfunction.

The truth is, the thyroid and the adrenals are inseparable partners. When the body perceives sustained stress, the survival mechanism orchestrated by the HPA axis overrides the metabolic priorities set by the thyroid, making even the most precise T4/T3 supplementation partially effective in many cases.


Two Mechanisms: How Adrenal Stress Blocks Thyroid Function

The HPA axis does not just distract the body; it actively interferes with thyroid hormone effectiveness through two primary mechanisms. Understanding these steps is critical for successful protocol design.

T4/T3 Conversion Blockade

The first, and most common, barrier is impaired peripheral conversion.

  • The Science: The body primarily produces T4 (the inactive storage hormone). For metabolic action, T4 must be converted into the active hormone, T3, primarily in the liver and gut, via the enzyme 5'-deiodinase.
  • The Adrenal Link: Chronic high cortisol and the associated inflammatory response (driven by HPA dysregulation) directly suppress the activity of the 5'-deiodinase enzyme. This results in the shunting of T4 to Reverse T3 (rT3), an inactive form that blocks T3 receptors.
  • The Result: The patient has adequate total T4, but insufficient active T3, leaving them clinically hypothyroid despite "normal" TSH readings. The source of inflammation that triggers this response can be emotional stress, GI inflammation, even toxin related/liver detox driven inflammation. 

Cellular Receptor Resistance

The second barrier occurs at the cellular level, undermining the effectiveness of any T3 that is produced.

  • The Science: Thyroid hormone must bind to receptors inside the cell nucleus to signal metabolic change.
  • The Adrenal Link: Chronic HPA stress, high cortisol, and accompanying inflammation induce a state of cellular thyroid receptor resistance. The cell effectively ignores the available T3 signal as a survival mechanism, prioritizing stress defense over metabolism.
  • The Result: Even supplemental T3 cannot fully penetrate the cell's metabolic machinery, and symptoms of hypothyroidism persist.

The Strategic Solution: Stabilize the Adrenals Also

For you to achieve the desired metabolic shift, ideally the adrenal system should be stabilized before maximal thyroid support is introduced. This foundational approach ensures the thyroid hormone, whether endogenous or supplemental, can actually be used by the body.

A Foundational Protocol Roadmap

Targeted intervention guided by comprehensive adrenal profiles (DUTCH/Hormone Zoomer/HUMAP/Salivary) offers a clear roadmap:

  1. Assess: Use adrenal testing to confirm HPA axis dysfunction.
  2. Restore the HPA Axis: Implement protocols using DHEA, pregnenolone, adaptogens (e.g., Ashwagandha, Rhodiola), nutritional support, and lifestyle changes to restore HPA axis balance and reduce systemic inflammation.
  3. Optimize Thyroid: Once the HPA axis is stable and the inhibitory blocks are removed, the existing or newly adjusted thyroid protocol can work more efficiently.

This approach restores cellular communication and allows the body's conversion pathways to normalize, leading to true, lasting resolution of hypothyroid symptoms. The key concept here is thyroid issues can be “primary” meaning the thyroid is actually the main problem or “secondary” meaning the thyroid is responding to inflammation in the body that can also be addressed via an adrenal program. 


Advance Your Precision with Adrenal Protocol Design

Mastering this nuanced connection and the corresponding titration of supplements requires structured guidance and intensive, case-based learning.

Our intensive—Adrenal Protocol Design—will explore these principles in depth. It's a core component of the KICP Level One Certification, a program designed to give practitioners the lab-based strategies and communication tools to build personalized, effective adrenal protocols for their patients.

Each module of our KICP Level One Certification is grounded in real-world lab interpretation, patient case studies, and proven protocols developed over several generations of practitioners, researchers, and lab directors. This isn't theory—it's a clinical roadmap for certified practitioners ready to integrate sophisticated, lab-based hormone balancing into their workflow.

The KICP Certification Advantage

Our KICP Level One Certification provides the tools to:

  • Translate complex DUTCH/Hormone Zoomer/HUMAP/salivary profiles into precise, personalized treatment plans.
  • Move beyond generalized adrenal support to root-cause correction of HPA axis dysfunction.
  • Position your practice at the forefront of data-driven hormone balancing and stress resilience.

Join us in redefining clinical precision—both for your patients and your practice. Learn more today!

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Dr. Dan Kalish

Dr. Dan Kalish

Founder of the Kalish Institute
Dan Kalish, DC, IFMCP, is founder of the Kalish Institute, an online practice implementation training program dedicated to building Integrative and Functional Medicine practices through clinical and business courses.